Clipboard URL doesn't stop the queue

[bigstar]

Do you have Clipboard Auto Transfer enabled? This option is intended to start transferring the queue after connect if a ftp url to a file was passed.

I think what's happening is that FlashFXP thinks you're passing a ftp url to a file and attempts to start the queue after connect. Make sure your ftp url ends with a / or \

Or if you are indeed passing a ftp url to a file this is the intended behavior.