I'm sorry but FlashFXP is in a code freeze because we're about to release the final version. Alternative solutions will be considered after we release FlashFXP v3.0.
Our command line handling is too complicated for your simple code suggestion. The use of quotes may not be the ideal solution because a " may appear more often in site names then a ;
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Just a crazy idea but I think you could escape the ftp path using % escape codes.. Just like you would use %20 for a space. I'm not sure what the excape code is for ; though.
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