If you run the portable installer manually you need to select the full path to where you want FlashFXP installed, including the FlashFXP folder.
An automatic update will put FlashFXP in the correct folder.
In build 1702 the installer was updated to provide a secondary check to determine if FlashFXP was running.
If the installer is unable to replace any file because it is in-use, it will automatically (with no way to override it) creates an auto start entry to resume the installation on next system restart.
I suspect that at some point the installer was unable to replace the FlashFXP.exe, if this occurs then its impossible to update FlashFXP without a system restart.
To simplify the update process we eliminated the step prompting the user to select a download location. This can be changed by checking the option "Prompt to select download location" in the Preferences > Live Update.
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