Something like an 'auto rename' option in file exists rules would probably be the best solution to the case sensitive filenames. This option is availible in another fxp client, and although very annoying that its on by default, works fairly well by simply appending (number) to the filename (preserving source casing)... eg AppleS.txt would save, then apples.txt would save as apples (1).txt
I think the modification time rules have been suggested before (obviously would only work properly when the 'keep source file time' option is enabled).
Not quite sure if or how both of those options could work together though.
I think the use of a zipping utility is a bad idea.
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