Flashfxp Uploading problem

[boxxyilu]

I'm running into issues sometimes when uploading wordpress themes where the .php file that I upload will have line breaks missing after I upload to the server.

So the file uploaded is broken (line breaks/space) missing.

The file on my local directory is not broken and to fix the error I'll get from installing the themes or even plugins, is opening editor with the file on the server and replacing the code with the local code and saving.

Maybe there is an option in flashfxp that is removing line indenting or something?

Please Help!
and thanks for your time...